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Abstract
Hypophosphatasia (HPP) is a rare metabolic bone disorder characterized by low levels of alkalinephosphatase that causes poor mineralization of the bone and an unexpected muscle impairment
in patients. In this thesis we pursued 2 lines of research: first developing technology to evaluate
the impact of HPP on bone microstructure; and second investigating the impact of HPP on muscle
function. Bone mineral directly strengthensthe bone and assistsin assembly of the bone collagen
matrix. Therefore, we developed polarimetric second harmonic generation to study bone matrix
assembly in bone collagen. We found that we could detect collagen organization in the bone with
polarized SHG, and that while resolution diminishes with depth, within the outer ~50 µm
polarization can be used to describe collagen secondary structures. We then applied our findings
to evaluate loss of bone collagen microstructure in HPP and developed a polarimetric gray-level
co-occurrence matrix imaging analysis technique that can effectively discriminate between
healthy and diseased bone. Finally, we turned our attention to the understudied effects of HPP
on muscle function. We determined that HPP muscles in the mouse model are weak and have
different fiber types while retaining their mitochondrial content. However, significant
impairment in mitochondrial Complex I function was detected- which may suggest a toxic
mitochondrial environment that is overloaded with ATP. Together, this dissertation provides
methodsforstudying the musculoskeletalsystem and further insight into the pathology of HPP.